MOLECULAR APPROACH FOR VALIDATION OF Lutjanus lutjanus AND Lutjanus vitta FROM TERENGGANU WATERS

Authors

  • NUR ALIYA RONHAKEM
  • MUHAMMAD SYAFIQ AIMAN MOHD NASIR
  • NUR ASMA ARIFFIN Universiti Malaysia Terengganu

DOI:

https://doi.org/10.46754/umtjur.v6i2.366

Keywords:

Molecular identification, morphological identification, cytochrome oxidase 1, Lutjanus lutjanus, Lutjanus vitta, Terengganu

Abstract

The Snapper is a fish that belongs to the family Lutjanidae and the order Perciformes. It can be discovered in tropical and subtropical mangrove habitats and reefs from depths ranging from 1 m to 500 m. Lutjanus lutjanus and Lutjanus vitta are two snappers found inhibiting Malaysia’s coastal waters, including Terengganu. A total of 100 Lutjanid samples with the admixture of varieties of freshness grade were collected from 11 sampling sites that consist of landing ports and fish markets. Note that external morphological examination based on the body stripes’ colour led to the identification of 30 samples of L. lutjanus and 30 samples of L. vitta. The samples were first identified via morphometric and meristic characterisation, with 39 morphological characters measured, and seven meristic characters were counted. 50 samples were successfully identified as L. lutjanus (n = 25) and L. vitta (n = 25) via morphometric and meristic identification. However, five samples of L. lutjanus with soft dorsal fin counts and five samples of L. vitta with the number of gill rakers did not follow the range stated by the previous study. These 10 samples were further analysed using molecular identification utilising the CO1 gene. Consequently, the constructed phylogenetic tree using the Neighbour Joining method with the Kimura-2 Parameter (K2P) model indicates that both species were divided into clades. Furthermore, the molecular approach indicated five samples were validated as L. Lutjanus while another five samples were L. vitta, with a 99% identical percentage. For future research, it is recommended to use fresh samples, increase the number of samples from other states, and continue to validate the identity via DNA barcoding using the CO1 gene.

References

Aaron, C. C., Aziz, A. H. A., Meriam, S. A. S. T., Seah, Y. G., & Asma, A. N. (2018). Morphological and molecular identification of mullet species (Mugilidae) from Setiu Wetland, Terengganu, Malaysia. Aquaculture, Aquarium, Conservation & Legislation, 11(2), 429-438.

Allen, G. R., & Talbot, J. H. (1985). Review of snappers of the genus Lutjanus (Pisces: Lutjanidae) from the Indo-Pacific, with the description of a new species. Indo-Pacific Fish, 11, 1-87.

Ambak, M. A., Isa, M. M., Zakaria, M. Z., & Ghaffar, M. A. (2012). Fishes of Malaysia (2nd ed.). Terengganu: Penerbit UMT, Universiti Malaysia Terengganu.

Ariffin, E. M., Sedrati, M., Daud, N. R., Mathew, M. J., Akhir, M. F., Awang, N. A., Yaacob, R., Siddiqui, N. A., & Hussain, M. L. (2019). Chapter 5 Shoreline evolution under the influence of oceanographic and monsoon dynamics: The case of Terengganu, Malaysia. In M. Ramkumar, R. Arthur James, M. David & K. Kumaraswamy (Eds.), Coastal zone management global perspective, regional processes, local issue (pp. 113-130). ElSevier Inc. DOI: https://doi.org/10.1016/B978-0-12-814350-6.00005-7

Azahar, M. A., Rosli, N. A., Ab Rahman, N. S., Badrul Hisham, N. S., Solehin, S. N., Rehan, A. M., Zainal, M., Abdul-Latiff, M. A., Seah, Y. G., & Kamarudin, K. R. (2022). Species checklist and DNA barcoding of marine fishes from Pulau Tinggi, Johor, Malaysia. Journal of Sustainability Science and Management, 17(11), 45-55. DOI: https://doi.org/10.46754/jssm.2022.11.006

Bingpeng, X., Heshan, L., Zhilan, Z., Chunguang, W., Yanguo, W., & Jianjun, W. (2018). DNA barcoding for identification of fish species in the Taiwan Strait. PLOS ONE, 13(6), e1098109. DOI: https://doi.org/10.1371/journal.pone.0198109

Bray, D. J. (2018). Tropical snappers, fusiliers, Lutjanidae in fishes of Australia. Accessed May 16, 2022, from https://fishesofaustralia. net.au/home/family/308

DOF Department of Fisheries Malaysia. (2021). Annual Fisheries Statistics 2021. Department of Fisheries, Ministry of Agriculture and Food Industry. Accessed February 10, 2023, from https://www.dof. gov.my/en/resources/fisheries-statistics-i/

Fadli, N., Mohd Nor, S. A., Othman, A. S., Sofyan, H., & Muchlisin, Z. A. (2020). DNA barcoding of commercially important reef fishes in Weh Island, Aceh, Indonesia. PeerJ Publishing, 8, e9641. DOI: https://doi.org/10.7717/peerj.9641

Francisco, S. M., Lima, C. S., Moreira, I., Shahin, A. A., & Ben Faleh, A. (2022). DNA barcoding of commercially relevant marine fish species in Tunisian waters. Journal of the Marine Biological Association of the United Kingdom, 102(3-4), 178-185. DOI: https://doi.org/10.1017/S0025315422000352

Gao, T., Ji, D., Xiao, Y., Xue, T., Yanagimoto, T., & Setoguma, T. (2011). Description and DNA barcoding of a new Sillago species, Sillago sinica (Perciformes: Sillaginidae), from coastal waters of China. Zoological Studies, 50(2), 254-263.

Iwatsuki, Y., Akazaki, M., & Yoshino, T. (1993). Validity of lutjanid fish, Lutjanus ophuysenii (Bleeker) with a related species, L. vitta (Quoy et Gaimard). Japanese Journal of Ichthyology, 40(1), 47-59.

Iwatsuki, Y., Tanaka, F., & Allen, G. R. (2015). Lutjanus xanthopinnis, a new species of snapper (Pisces: Lutjanidae) from the Indo-west Pacific, with a redescription of Lutjanus madras (Valenciennes 1831). Journal of the Ocean Science Foundation, 17, 22-42.

Jaonalison, H., Durand, J.-D., Mahafina, J., Valade, P., Collet, A., Cerqueira, F., & Ponton, D. (2022). Application of DNA barcoding for monitoring Madagascar fish biodiversity in coastal areas. Diversity, 14(5), 377. DOI: https://doi.org/10.3390/d14050377

Liu, B., Yan, Y., Zhang, N., Guo, H., Liu, B., Yang, J., Zhu, K., & Zhang, D. (2022). DNA barcoding is a useful tool for the identification of the family Scaridae in Hainan. Journal of Marine Science and Engineering, 10(12), 1915. DOI: https://doi.org/10.3390/jmse10121915

Matsunuma, M. (2011). Fishes of Terengganu: East Coast of Malay Peninsula, Malaysia. National Museum of Nature and Science.

Meiklejohn, K. A., Damaso, N., & Robertson, J. M. (2019). Assessment of bold and GenBank – Their accuracy and reliability for the identification of biological materials. PLOS ONE, 14(6), e0217084. DOI: https://doi.org/10.1371/journal.pone.0217084

Meshram, M. M., Mridula, R., Rajesh, K. M., & Suyuni, N. K. (2021). Morphological measurements, length weight relationship and relative condition factor (kN) of obtuse Barracuda Sphyraena obtusata (Cuvier, 1829) from South-Eastern Arabian Sea. Indian Journal of Geo-Marine Sciences, 50(06), 481-488.

Mohd Noh, A. W., Shuib, A., Tai, S., & Mohd Noh, K. (2018). Indicators of governance of marine ecotourism resources: Perception of communities in Pulau Perhentian, Terengganu. International Journal of Business and Society, 19(S1), 17-25.

Motomura, H., Kimura, S., Seah, Y. G., Sheikh Abdul Kadie, S. T., & Mazlan, A. G. (2021). Reef and shore fishes of Bidong Island, off East Coast Malay Peninsula. The Kagoshima University Museum.

Muhammad, H., Iqbal, Z., Iqbal, M. U., Younas, T., & Bashir, Q. (2016). An efficient method for DNA isolation from fish fin. Pakistan Journal of Agricultural Sciences, 53(4), 843-850. DOI: https://doi.org/10.21162/PAKJAS/16.3998

Olii, A. H., Sahami, F. M., Hamzah, S. N., & Pasisingi, N. (2019). Molecular approach to identify gobioid fishes, “Nike” and “Hundala” (local name), from Gorontalo Waters, Indonesia. OnLine Journal of Biological Sciences, 19(1), 51-56. DOI: https://doi.org/10.3844/ojbsci.2019.51.56

Pentinsaari, M., Ratnasingham, S., Miller, S. E., & Hebert, P. D. (2020). Bold and genbank revisited – Do identification errors arise in the lab or in the sequence libraries? PLOS ONE, 15(4), e0231814. DOI: https://doi.org/10.1371/journal.pone.0231814

Qin, Y., Song, N., Zou, J., Zhang, Z., Cheng, G., Gao, T., & Zhang, X. (2013). A new record of a flathead fish (Teleostei: Platycephalidae) from China based on morphological characters and DNA barcoding. Chinese Journal of Oceanology and Limnology, 31(3), 617-624. DOI: https://doi.org/10.1007/s00343-013-2186-z

Sala, R., Kusuma, A. B., & Pranata, B. (2023). Phylogenetic of red snapper (Lutjanidae) in Yapen Island waters, Papua, Indonesia. Biodiversitas, 24(2), 716-723. DOI: https://doi.org/10.13057/biodiv/d240206

Sawalman, R., & Madduppa, H. (2020). The analysis of morphological and genetic characteristics of yellowstripe scad from Muara Baru modern fish market in North Jakarta. Jurnal Ilmiah Perikanan dan Kelautan, 12(2), 308-314. DOI: https://doi.org/10.20473/jipk.v12i2.17241

Seah, Y. G., Ali, M. S., Mazlan, A. G., & Mat Jaafar, T. N. A. (2021). Marine fishes of Kuantan: Malaysian Biodiversity Information System (MYBIS). Terengganu: Penerbit UMT.

Simon, K. D., Bakar, Y., Temple, S. E., & Mazlan, A. G. (2010). Morphometric and meristic variation in two congeneric Archer Fishes Toxotes Chatareus (Hamilton 1822) and Toxotes Jaculatrix (pallas 1767) inhabiting Malaysian Coastal Waters. Journal of Zhejiang University SCIENCE B, 11(11), 871-879. DOI: https://doi.org/10.1631/jzus.B1000054

Tahseen, Q. (2014). Taxonomy-the crucial yet misunderstood and disregarded tool for studying biodiversity. Journal of Biodiversity & Endangered Species, 02(03), 1-9. DOI: https://doi.org/10.4172/2332-2543.1000128

Tamura, K., Stecher, G., & Kumar, S. (2021). Mega11: Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution, 38(7), 3022-3027. DOI: https://doi.org/10.1093/molbev/msab120

Teletchea, F. (2009). Molecular identification methods of fish species: Reassessment and possible applications. Reviews in Fish Biology and Fisheries, 19(3), 265-293. DOI: https://doi.org/10.1007/s11160-009-9107-4

Tsoupas, A., Papavasileiou, S., Minoudi, S., Gkagkavouzis, K., Petriki, O., Bobori, D., Sapounidis, A., Koutrakis, E., Leonardos, I., Karaiskou, N., & Triantafyllidis, A. (2022). DNA barcoding identification of Greek freshwater fishes. PLOS ONE, 17(1), e0263118. DOI: https://doi.org/10.1371/journal.pone.0263118

Wang, L., Wu, Z., Liu, M., Liu, W., Zhao, W., Liu, H., & You, F. (2018). DNA barcoding of marine fish species from Rongcheng Bay, China. PeerJ, 6, e5013. DOI: https://doi.org/10.7717/peerj.5013

Ward, R. D., Zemlak, T. S., Innes, B. H., Last, P. R., & Hebert, P. D. (2005). DNA barcoding of Australia’s fish species. Philosophical Transactions of the Royal Society B: Biological Sciences, 360(1462), 1847-1857. DOI: https://doi.org/10.1098/rstb.2005.1716

Zulkifli, N. H., Ibrahim, P. H., & Zakariya, K. (2020). The significance of coastal landscape characters among locals and tourists: A case study of Gebeng – Kuala Terengganu tourism route. Journal of Architecture, Planning and Construction Management, 10(1), 44-54. DOI: https://doi.org/10.31436/japcm.v10i1.388

Additional Files

Published

2024-04-29

How to Cite

RONHAKEM, N. A. ., MOHD NASIR, M. S. A. ., & ARIFFIN, N. A. . (2024). MOLECULAR APPROACH FOR VALIDATION OF Lutjanus lutjanus AND Lutjanus vitta FROM TERENGGANU WATERS. Universiti Malaysia Terengganu Journal of Undergraduate Research, 6(2), 41–53. https://doi.org/10.46754/umtjur.v6i2.366